GgaEX0018899 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34676308-34677654:-
Coord C1 exon
chr7:34677471-34677654
Coord A exon
chr7:34676990-34677082
Coord C2 exon
chr7:34676308-34676457
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCAGTCCTTTCTCCTGCAGGTC
3' ss Score
11.66
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTGAAATACCACGAGGATTTTGAGAAAAACAAAGGTACTTTCACACCTGTAGTCACTGACCCCATTACAGAACGTGTGAAGAAGAACATGCACGACTTCAGTGACATCAGCTATAGGGGCATTCAGAGACGAGTGGTAGAAATGGAGCAAAAGCGCGTGGACCAGGACCAGGAGAACCTGACAG
Seq A exon
GTCTTCGTGTGTGGCGCACAAATCCCGGCTCAGTCTTTGACTACGACCCTGCAGAGGACAACATTCAGTCCAGGAGCTTACACATGATCTCAG
Seq C2 exon
TCCAAGCGCAGCGCCGCAGCAGGGAGCACTCCCGCTCTGCCAGCGCCCTCAGCATCAGCGGGGGGGATGAGAAATCAGAACCCTCCGAGGGGGTGAATCAGCACCTGTCCTACTACAGCAGCGGAGGCTTCTTTACCACCACTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'92-85,'92-84,93-85
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.531 C2=0.667
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAGCAAAAGCGCGTG
R:
CTCCGCTGCTGTAGTAGGACA
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]