MmuEX6101313 @ mm10
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52147637-52149277:-
Coord C1 exon
chr2:52149094-52149277
Coord A exon
chr2:52148761-52148853
Coord C2 exon
chr2:52147637-52147789
Length
93 bp
Sequences
Splice sites
3' ss Seq
AATACTCGCTTTCTTTTCAGGTC
3' ss Score
11.28
5' ss Seq
ATGGTATAC
5' ss Score
2.73
Exon sequences
Seq C1 exon
GTGAAATATCATGAAGACTTTGAGAAACACAAAGGCTGCTTTACACCAGTGGTGACAGACCCTATCACTGAACGAGTAAAGAAAAACACACAGGACTTCAGTGACATTAACTACCGAGGTATTCAGAGAAAAGTGGTGGAAATGGAACAAAAGCGGAATGACCAGGATCAAGATACCATTACAG
Seq A exon
GTCTGCGTGTCTGGCGTACTAACCCTGGTTCAGTTTTTGACTATGATCCGGCAGAAGACAACATTCAATCCCGAAGTCTGCACATGATTAATG
Seq C2 exon
TCCAAGCTCAACGCCGGAGCCGGGACCAGTCAAGATCTGCCAGTGCACTGAGTATCAGTGGGGGCGAGGAGAAATCTGAGCACTCCGAAGCTGCGGACCAGCGCCTTTCCACATACAGTGACGGAGGTGCCTTCTTCTCTGCAACTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'177-188,'177-187,178-188
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.629 A=0.622 C2=0.676
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGCGGAATGACCAGGA
R:
AAGGCACCTCCGTCACTGTAT
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types