GgaEX0018899 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36802857-36804203:-
Coord C1 exon
chr7:36804020-36804203
Coord A exon
chr7:36803539-36803631
Coord C2 exon
chr7:36802857-36803006
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCAGTCCTTTCTCCTGCAGGTC
3' ss Score
11.66
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GTGAAATACCACGAGGATTTTGAGAAAAACAAAGGTACTTTCACACCTGTAGTCACTGACCCCATTACAGAACGTGTGAAGAAGAACATGCACGACTTCAGTGACATCAGCTATAGGGGCATTCAGAGACGAGTGGTAGAAATGGAGCAAAAGCGCGTGGACCAGGACCAGGAGAACCTGACAG
Seq A exon
GTCTTCGTGTGTGGCGCACAAATCCCGGCTCAGTCTTTGACTACGACCCTGCAGAGGACAACATTCAGTCCAGGAGCTTACACATGATCTCAG
Seq C2 exon
TCCAAGCGCAGCGCCGCAGCAGGGAGCACTCCCGCTCTGCCAGCGCCCTCAGCATCAGCGGGGGGGATGAGAAATCAGAACCCTCCGAGGGGGTGAATCAGCACCTGTCCTACTACAGCAGCGGAGGCTTCTTTACCACCACTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'151-151,'151-150,152-151
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=0.531 C2=0.667
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGGAGCAAAAGCGCGTG
R:
CTCCGCTGCTGTAGTAGGACA
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]