RnoEX6054304 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84142908-84166072:-
Coord C1 exon
chr17:84165901-84166072
Coord A exon
chr17:84160986-84161135
Coord C2 exon
chr17:84142908-84143014
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACATTCTCCCTCTGCTGTAGAAA
3' ss Score
8.76
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
Seq A exon
AAAAGGCAAGTCAGTACCAGAGCCGCCTGTCTCGCTCACACTCTGGCAGCACTTTTGGTACGGGTCTGGGAGATGACAAGTCAGAGATCTCCGAGCTCTACCCTAGCTTTTCCTGTTGCAGTGAGGTAACAAGACCATCTGATGAAGGAG
Seq C2 exon
CACCCGTCCTTCCTGGAGCTTACCAGCAGAGCCACTCCCAAGGCTACGGGTACATGCACCAGACCAGCGTGTCGTCCGTGAGGTCAATGCAGCATTCAGCAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-'70-56,'70-55,73-56=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.490 C2=0.306
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGAAGGGAAGAGGCTTCA
R:
TGCTGAATGCTGCATTGACCT
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]