MmuEX0031346 @ mm10
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17350705-17374356:-
Coord C1 exon
chr2:17374185-17374356
Coord A exon
chr2:17369529-17369678
Coord C2 exon
chr2:17350705-17350811
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATATTCTCCCTCTGATGTAGAAA
3' ss Score
7.67
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
GTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTG
Seq A exon
AAAAGGCAAGTCAGTACCGGAGACGCCTGTCTCGCTCACATTCCGGCAGCACATTTGGTACAGGTCTGGGAGATGACAAGTCAGAGATCTCTGAGCTGTACCCTAGCTTTTCATGCTACAGTGAGGTAACAAGACCATCTGACGAAGGAG
Seq C2 exon
CACCTGTCCTTCCTGGAGCTTACCAGCAGAGCCATTCCCAAGGCTATGGGTACATGCATCAGACCAGCGTGTCGTCCATGAGGTCAATGCAGCCTCCAGCACATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.352 A=0.392 C2=0.449
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGCTTCACTCCCGTTG
R:
TAGATGTGCTGGAGGCTGCAT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types