GgaEX0028356 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18225530-18244217:+
Coord C1 exon
chr2:18225530-18225701
Coord A exon
chr2:18230010-18230138
Coord C2 exon
chr2:18244102-18244217
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTCTACCTTTGTAGAAA
3' ss Score
10.22
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
Seq A exon
AAAGAGCAAGCCGCTACAGTAAGCAGTACTTGCATTCTACAAGTTTGGGAGATTATAAATCAGATGGTTCTGACACGAACCCTACCTTTTCTTACTGCAGTGAGATAACAAGGCCATCTGATGAAGGAG
Seq C2 exon
CCCCTGTACTCCCTGGGGCATATCAGCAAAGCCAGTCCCAAGGATATGGATACATGCACCAGACCAGTATGTCGTCTATGAGGTCAGTGCATTCACAGCCTCATCCAGCAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX2-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.428 A=0.318 C2=0.538
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAAAGGGCAGGGGTTTC
R:
TGGATGAGGCTGTGAATGCAC
Band lengths:
255-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]