BtaEX0024192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22384878-22413039:-
Coord C1 exon
chr13:22412868-22413039
Coord A exon
chr13:22410038-22410187
Coord C2 exon
chr13:22384878-22384984
Length
150 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCCTTCCAATATAGAAA
3' ss Score
7.52
5' ss Seq
GAGGTATCA
5' ss Score
6.35
Exon sequences
Seq C1 exon
GTGAAATATCATGAAGATTTTGAAAAGACAAAGGGAAGGGGCTTTACTCCTGTTGTGGATGACCCTGTGACAGAGCGAGTGAGAAGGAACACCCAGGTCGTCAGCGATGCTGCCTATAAAGGTGTCCATCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTG
Seq A exon
AAAAGGCGAATCTTTATAGGAGACAACGGTCTCGGTCTTACTCGAGCAGTACTTTTGGTACAGGTCTGGGAGATGACAAATCAGAAATATCTGAGATTTACCGTAGCTTTTCATGCTGCAGTGAGGTAACAAGACCATCTGATGAAGGAG
Seq C2 exon
CGCCTGTTCTTCCTGGAGCCTACCAGCAAAGCCATTCTCAAGGCTATGGGTACATGCACCAGACCAGCCTGTCATCTGTGAGGTCAATGCAGCATTCACCAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.196 C2=0.361
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGACAAAGGGAAGGGGC
R:
TGCTGCATTGACCTCACAGAT
Band lengths:
246-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development