RnoEX0060869 @ rn6
Exon Skipping
Gene
ENSRNOG00000007607 | Nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:RGD Symbol;Acc:620029]
Coordinates
chr7:142917165-142918319:+
Coord C1 exon
chr7:142917165-142917294
Coord A exon
chr7:142917596-142917747
Coord C2 exon
chr7:142918117-142918319
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGCCTATTTTTCTCTGCAGTTG
3' ss Score
10.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGCACAGTACAGAAAAGTGCCAAGTACATCTGCCTGGCAAACAAGGACTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGTCGCTTCCAGAAGTGCCTGGCTGTGGGCATGGTGAAGGAAG
Seq A exon
TTGTCCGGACAGACAGCCTAAAGGGGCGGCGGGGCCGGCTACCTTCAAAACCCAAGCAGCCCCCAGATGCCTCCCCTACCAATCTCCTCACGTCCCTCATTCGAGCACATTTGGACTCCGGGCCTAACACTGCCAAGTTGGACTATTCCAAG
Seq C2 exon
TTCCAGGAACTGGTGCTGCCCCGCTTTGGAAAGGAAGATGCCGGTGACGTGCAGCAATTTTATGACTTGCTCTCTGGCTCCCTGGACGTCATCCGGAAGTGGGCGGAAAAGATCCCGGGCTTCATTGAGCTTTCCCCAGGAGACCAAGACCTGTTGCTAGAGTCCGCCTTTCTGGAGCTCTTTATCCTCCGCCTGGCCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007607-'13-7,'13-6,15-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.373 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(58.6=93.2)
A:
NO
C2:
PF0010425=Hormone_recep=PU(32.5=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCCTGGCAAACAAGGA
R:
TGGGGAAAGCTCAATGAAGCC
Band lengths:
242-394
Functional annotations
There are 2 annotated functions for this event
PMID: 11274386
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay. ELM ID: ELMI000100; ELM sequence: RGRLPSKPK; Overlap: FULL
PMID: [1]
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000099; ELM sequence: RGRLPSKPK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]