RnoEX0063680 @ rn6
Exon Skipping
Gene
ENSRNOG00000000440 | Pbx2
Description
PBX homeobox 2 [Source:RGD Symbol;Acc:1303084]
Coordinates
chr20:4360078-4361036:+
Coord C1 exon
chr20:4360078-4360231
Coord A exon
chr20:4360557-4360618
Coord C2 exon
chr20:4360950-4361036
Length
62 bp
Sequences
Splice sites
3' ss Seq
CGGCTCTTTCAATCTCTCAGGAT
3' ss Score
8.14
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTTTCCAACTGGTTTGGTAACAAGCGGATCCGCTATAAGAAAAACATCGGGAAGTTCCAAGAGGAGGCAAATATCTATGCTGTGAAGACAGCCGTGTCCGTCGCCCAGGGCGGCCACAGCCGCACCAGCTCTCCAACGCCCCCTTCCTCTGCAG
Seq A exon
GATCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAATGGAGATTCCTACCCTGCTTCCCAG
Seq C2 exon
GTGGAATCTCTCCGACACTCGATGGGGCCAGCGAGCTATGGGGATAACATCGGGGGAGGCCAGATATATAGTCCTCGAGAAATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000440-'9-14,'9-13,10-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.500 C2=0.931
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGAAGTTCCAAGAGGAGG
R:
CCCATCGAGTGTCGGAGAGAT
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]