BtaEX0026037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014421 | PBX2
Description
Bos taurus pre-B-cell leukemia homeobox 2 (PBX2), mRNA. [Source:RefSeq mRNA;Acc:NM_001256883]
Coordinates
chr23:27005671-27006509:+
Coord C1 exon
chr23:27005671-27005824
Coord A exon
chr23:27006213-27006301
Coord C2 exon
chr23:27006423-27006509
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCTGCTCCCCCAAGGCT
3' ss Score
6.69
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTCTCCAACTGGTTTGGCAACAAGCGGATTCGCTATAAGAAAAACATAGGAAAGTTCCAGGAGGAGGCAAACATTTATGCCGTCAAGACCGCCGTGTCGGTCACCCAGGGAGGTCACAGCCGCACCAGCTCCCCGACACCCCCTTCCTCCGCAG
Seq A exon
GCTCTGGTGGCTCTTTCAATCTCTCAGGATCCGGTGACATGTTTCTGGGGATGCCCGGGCTCAACGGAGATTCCTACTCTGCCTCCCAG
Seq C2 exon
GTGGAATCACTCCGACACTCAATGGGGCCAGGGGGCTACGGGGATAACCTCGGGGGAGGCCAGATGTATAGCCCTCGGGAAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014421_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCAGGAGGAGGCAAACA
R:
AGGGCTATACATCTGGCCTCC
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development