DreEX6042903 @ danRer10
Exon Skipping
Gene
ENSDARG00000019717 | pbx2
Description
pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
Coordinates
chr16:48689329-48696705:+
Coord C1 exon
chr16:48689329-48689470
Coord A exon
chr16:48691969-48692063
Coord C2 exon
chr16:48696655-48696705
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTGTCCTCCAGGCT
3' ss Score
11.25
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
GTGTCCAACTGGTTTGGCAACAAGAGGATTCGCTATAAGAAGAACATTGGGAAATACCAGGAAGAGGCCAATCTGTATGCCATGAAGACAGCCTTAGGGGCGACACAGAGCGAAGATTCACCCCACACTCCAAACTCCACTG
Seq A exon
GCTCAGGGTCGTTCTCTCTGTCAGGATCAGCTGACTGCTTTCTAGGGGTTCCACCAATGAACGGCGAGCAGCCTCCGTATCACATGGGAGCTCAG
Seq C2 exon
GACGCTCAATCGCGCTTCTCAGAAAGACTGTATATTACCAGAGAGAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019717-'6-9,'6-7,7-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.727 C2=1.000
Domain overlap (PFAM):
C1:
PF070346=ORC3_N=PD(26.9=58.3),PF0004624=Homeobox=PD(21.7=27.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAGAGGATTCGCTAT
R:
CCGGCTCTCTCTGGTAATATACA
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]