MmuEX6077122 @ mm10
Exon Skipping
Gene
ENSMUSG00000034673 | Pbx2
Description
pre B cell leukemia homeobox 2 [Source:MGI Symbol;Acc:MGI:1341793]
Coordinates
chr17:34594801-34595714:+
Coord C1 exon
chr17:34594801-34594954
Coord A exon
chr17:34595265-34595353
Coord C2 exon
chr17:34595628-34595714
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTGCCCTCGAAAGGCT
3' ss Score
5.81
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTTTCCAACTGGTTCGGTAACAAGCGAATTCGCTACAAGAAGAATATTGGGAAGTTCCAAGAGGAGGCGAACATCTATGCTGTGAAGACAGCCGTGTCAGTTGCCCAGGGGGGCCACAGCCGCACCAGCTCTCCAACGCCCCCTTCCTCTGCAG
Seq A exon
GCTCTGGCGGCTCTTTCAATCTCTCAGGATCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAATGGCGATTCCTACCCTGCTTCCCAG
Seq C2 exon
GTGGAATCACTCCGACACTCGATGGGGCCGGGGAGCTACGGGGATAACATTGGGGGAGGTCAGATATACAGTCCTCGAGAAATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034673-'13-18,'13-15,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.500 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAGTTCCAAGAGGAGGC
R:
ACCTCCCCCAATGTTATCCCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types