HsaEX1027169 @ hg38
Exon Skipping
Gene
ENSG00000204304 | PBX2
Description
PBX homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8633]
Coordinates
chr6:32186604-32187395:-
Coord C1 exon
chr6:32187242-32187395
Coord A exon
chr6:32186813-32186874
Coord C2 exon
chr6:32186604-32186690
Length
62 bp
Sequences
Splice sites
3' ss Seq
CGGCTCTTTCAATCTCTCAGGAT
3' ss Score
8.14
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTCTCCAACTGGTTTGGCAACAAGAGGATTCGCTATAAGAAAAACATCGGAAAGTTCCAAGAGGAGGCAAACATCTATGCTGTCAAGACCGCCGTGTCAGTCACCCAGGGGGGCCACAGCCGCACCAGCTCCCCGACACCCCCTTCCTCTGCAG
Seq A exon
GATCTGGAGACATGTTTCTGGGGATGCCTGGGCTCAACGGAGATTCCTATTCTGCTTCCCAG
Seq C2 exon
GTGGAATCACTCCGACACTCGATGGGGCCAGGGGGCTATGGGGATAACCTCGGGGGAGGCCAGATGTACAGCCCACGGGAAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204304_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTATGCTGTCAAGACCGCC
R:
CCCCCGAGGTTATCCCCATAG
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains