RnoEX0064370 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56581489-56585767:+
Coord C1 exon
chr18:56581489-56581632
Coord A exon
chr18:56585432-56585489
Coord C2 exon
chr18:56585621-56585767
Length
58 bp
Sequences
Splice sites
3' ss Seq
GGGGCATGGCAGAAAACCAGAGA
3' ss Score
-10.92
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TCTTTGACTCAGTTTCTGGGCTGGTCAGTCTTAAACCCTGACACCTACGAGTCCATGAACAAACTTGAGAACAGGAAGGATATCTTCCAGGACATCGTAAAATATCACGTCAAGTGTGATAATGAGGAAATTCAGAAGATCTTG
Seq A exon
AGAGGTGTATGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATCCTG
Seq C2 exon
CAAGAAGAACTTCCAGATGCCGAGAAATATGAAATCAACAAGTTTCACTTCAGTGACCTGCCCCTTACGGAACTGGAGCTGGTGAAATGCGGCATACAGATGTACTATGAGCTCAGAGTGGTGGACAAGTTCCACATCCCGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'9-12,'9-11,10-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACACCTACGAGTCCAT
R:
TCGGCATCTGGAAGTTCTTCT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]