BtaEX6041234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63219096-63223654:-
Coord C1 exon
chr7:63223511-63223654
Coord A exon
chr7:63219463-63219528
Coord C2 exon
chr7:63219096-63219242
Length
66 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCGGGCCCTGGCAGAAA
3' ss Score
5.24
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TCTTTGGCCCAGTTCCTGGGCTGGTCTGTCTTAAATCCTGACACTTATGAGTTGATGAACAAACTTGAAAACAGGAAGGATATTTTCCAAGACATGGTGAAATACCACGTGAAGTGTGACAATGAAGAAATCCAGACAATCTTG
Seq A exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCGTGGGAATGCGAGGAAGAAGAACTGGCTGAGATCCTG
Seq C2 exon
CAAGGAGAGCTGCCAGATGCAGACAAATATGAAATTAATAAATTCCACTTCAGCGACCTGCCCCTGACGGAACTGGAGCTGGTGAAATGTGGAATTCAGATGTACTATGAGCTCAAAGTGGTGGATAAATTTCACATTCCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGTCTTAAATCCTGACACT
R:
GCAGGTCGCTGAAGTGGAATT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]