HsaEX6100573 @ hg38
Exon Skipping
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr5:149886265-149899524:-
Coord C1 exon
chr5:149899375-149899524
Coord A exon
chr5:149896711-149896776
Coord C2 exon
chr5:149886265-149886374
Length
66 bp
Sequences
Splice sites
3' ss Seq
GCCATTTTGGGTCCTGGCAGAAA
3' ss Score
6.56
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AAAGAACCTCTGGATGAGTCTGGATGGATGATTAAAAATGTGCTTTCAATGCCGATTGTGAACAAGAAGGAAGAAATTGTTGGAGTGGCCACATTTTACAATCGTAAAGATGGGAAGCCCTTTGATGAAATGGATGAGACGCTCATGGAG
Seq A exon
AAAACCAGAGAGGTGTATGGGAAGGAGCCATGGGAGTGTGAGGAAGAGGAGCTGGCTGAGATCCTG
Seq C2 exon
ACGGGAAAGCTGAAGCGCTACTTCACGGACCTAGAGGCCTTGGCCATGGTCACTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACCTCTACCAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915_MULTIEX2-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
NO
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGGATGAGTCTGGATGG
R:
AAGTAGCGCTTCAGCTTTCCC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains