DreEX6084139 @ danRer10
Exon Skipping
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20330171-20331061:+
Coord C1 exon
chr21:20330171-20330314
Coord A exon
chr21:20330407-20330472
Coord C2 exon
chr21:20330915-20331061
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTATTACCTTTGTAGAAA
3' ss Score
7.29
5' ss Seq
CTGGTACAC
5' ss Score
2.74
Exon sequences
Seq C1 exon
GCTTTGACACAGTTTTTAGGCTGGTCGGCTCTCAACACAGACACCTACGACAAAATGAATAAACTGGAGAACAGGAAAGATATTGCCCAGGACATGGTGCTGTACCATGTCAAATGTCGAGATGATGAGATCCAAGATATCCTC
Seq A exon
AAAACAAGAGAATATTTTGACAGGGAGCCAAGGGACTGCGAGGAGGAGGAGCTTTTGGAGATTCTG
Seq C2 exon
AAAAAAGAGCTGCCCGGCCCCAAGAAGTTTGAGATCTACGCTTTCCATTTTTCAGATTTTGACTGCACTGAACTCCAGCTTGTTATGTGTGGCATCCAGATGTACTATGAAGTTGGAGTGGTTAAAAAGTTCCAGGTCCCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(4.5=16.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTTTTAGGCTGGTCGGC
R:
ATCTCAAACTTCTTGGGGCCG
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]