MmuEX6001894 @ mm10
Exon Skipping
Gene
ENSMUSG00000024575 | Pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:MGI Symbol;Acc:MGI:97524]
Coordinates
chr18:61254303-61257327:+
Coord C1 exon
chr18:61254303-61254446
Coord A exon
chr18:61256984-61257049
Coord C2 exon
chr18:61257181-61257327
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTGTTTTGGGAACAGAAA
3' ss Score
6.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TCTTTGACTCAGTTTCTGGGATGGTCAGTCTTAAACCCTGACACCTACGAGTCCATGAACAAGCTCGAGAACAGGAAGGATATCTTCCAGGACATCGTGAAATATCACGTGAAGTGTGATAACGAAGAAATCCAGAAGATCTTG
Seq A exon
AAAACCAGAGAGGTGTACGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATCCTG
Seq C2 exon
CAAGGAGAACTTCCAGACGCGGAGTCATACGAAATCAACAAGTTCCACTTCAGCGACCTGCCACTCACGGAGCTGGAGCTGGTGAAGTGCGGCATCCAGATGTACTACGAGCTCAGAGTGGTGGACAAGTTCCACATCCCGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024575-'16-15,'16-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(5.1=18.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACACCTACGAGTCCAT
R:
GGTCGCTGAAGTGGAACTTGT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types