RnoEX0065867 @ rn6
Exon Skipping
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15293656-15294459:-
Coord C1 exon
chr10:15294306-15294459
Coord A exon
chr10:15294113-15294224
Coord C2 exon
chr10:15293656-15293736
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATGGGCCTATGTCCTACAGGCT
3' ss Score
7.12
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GCTATATCCACCTAATGTCCCCCTTTATTGAGCACATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGACATCATCGCCCTTCTTACCTTCCACATCTACTGCTTCTATGTGTACGGTGCCAG
Seq A exon
GCTGTACTGCCTGAAGATCTATGGCCTCTCCTCGCTCTGGCGTCTCTTCCGGGGAAAGAAGTGGAATGTTCTGCGCCAGCGGGTGGATTCTTGTTCCTATGACCTTGACCAG
Seq C2 exon
CTGTTCATCGGGACCTTGCTCTTCACCATCTTGGTCTTCTTGCTGCCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140-'19-12,'19-10,20-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
PF0502410=Gpi1=FE(19.5=100)
C2:
PF0502410=Gpi1=PD(8.9=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATATCCACCTAATGTCCCCCT
R:
TACCAGGTAGTACAGAGCGGTG
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]