HsaEX6041378 @ hg19
Exon Skipping
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:628785-630263:+
Coord C1 exon
chr16:628785-628938
Coord A exon
chr16:629069-629180
Coord C2 exon
chr16:630183-630263
Length
112 bp
Sequences
Splice sites
3' ss Seq
GACAGCACTGCGTCCTGTAGGCT
3' ss Score
3.77
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCTACATCCACCTCATGTCCCCCTTCGTGGAGCACATCCTTTGGCACGTGGGCCTCTCGGCCTGCCTGGGCCTGACGGTGGCCCTGTCCCTCCTCTCGGACATTATCGCCCTCCTCACCTTCCACATCTACTGCTTTTACGTCTATGGAGCCAG
Seq A exon
GCTGTACTGCCTGAAGATCCATGGCCTGTCCTCACTGTGGCGTCTGTTCCGGGGGAAGAAGTGGAACGTTCTGCGCCAGCGCGTGGACTCCTGTTCCTATGACCTGGACCAG
Seq C2 exon
CTGTTCATCGGGACTCTGCTCTTCACCATCCTGCTCTTCCTCCTGCCTACCACAGCCCTGTACTACCTGGTGTTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
PF0502410=Gpi1=FE(19.5=100)
C2:
PF0502410=Gpi1=PD(12.8=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCACCTCATGTCCCCC
R:
AACACCAGGTAGTACAGGGCT
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)