GgaEX0002429 @ galGal3
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14275540-14280555:+
Coord C1 exon
chr14:14275540-14275693
Coord A exon
chr14:14278660-14278771
Coord C2 exon
chr14:14280475-14280555
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGCATCTTCTCTTTGCTCAGGCT
3' ss Score
5.84
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
Seq A exon
GCTCTACTGCCTGAAGATCTATGGCCTGTCGTCTCTCTGGCGCTTGTTCCGTGGGAAGAAGTGGAACGTCCTCCGGCAGCGGGTGGATTCCTGCTCTTATGACTTAGACCAG
Seq C2 exon
TTATTTATTGGCACGCTGCTATTTACCATCCTGCTGTTCCTTCTGCCTACAACTGCACTGTACTACTTGGTGTTTACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
PF0502410=Gpi1=FE(19.5=100)
C2:
PF0502410=Gpi1=PD(8.9=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATTCACCTGATGTCCCC
R:
AGGGTAAACACCAAGTAGTACAGTG
Band lengths:
234-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]