MmuEX0035080 @ mm9
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26067903-26068772:-
Coord C1 exon
chr17:26068619-26068772
Coord A exon
chr17:26068407-26068518
Coord C2 exon
chr17:26067903-26067983
Length
112 bp
Sequences
Splice sites
3' ss Seq
CATGAGCATGTGACCTACAGGCT
3' ss Score
3.09
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTTCCACATCTATTGCTTCTATGTCTACGGTGCCAG
Seq A exon
GCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTCTGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTGACCAG
Seq C2 exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-'21-29,'21-26,22-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
PF0502410=Gpi1=FE(19.5=100)
C2:
PF0502410=Gpi1=PD(10.8=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATATCCACCTTATGTCCCCCT
R:
TACCAGGTAGTACAGAGCGGTG
Band lengths:
226-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: