MmuINT0119578 @ mm9
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26068407-26068772:-
Coord C1 exon
chr17:26068619-26068772
Coord A exon
chr17:26068519-26068618
Coord C2 exon
chr17:26068407-26068518
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CATGAGCATGTGACCTACAGGCT
3' ss Score
3.09
Exon sequences
Seq C1 exon
GCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTTCCACATCTATTGCTTCTATGTCTACGGTGCCAG
Seq A exon
GTATGTGTAAGTGCAAGTGGGCGCTCAACAGGGTTTGAGCGAATAGGTGAGGTGTGGCCCTCATGGGTGAAGTGTGGCCTCATGAGCATGTGACCTACAG
Seq C2 exon
GCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTCTGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-Pigq:NM_011822:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NO
C2:
PF0502410=Gpi1=FE(19.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCTTATGTCCCCCTTT
R:
AACAAGAATCCACTCGCTGGC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: