MmuINT0119578 @ mm10
Intron Retention
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25931462-25931827:-
Coord C1 exon
chr17:25931674-25931827
Coord A exon
chr17:25931574-25931673
Coord C2 exon
chr17:25931462-25931573
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CATGAGCATGTGACCTACAGGCT
3' ss Score
3.09
Exon sequences
Seq C1 exon
GCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTTCCACATCTATTGCTTCTATGTCTACGGTGCCAG
Seq A exon
GTATGTGTAAGTGCAAGTGGGCGCTCAACAGGGTTTGAGCGAATAGGTGAGGTGTGGCCCTCATGGGTGAAGTGTGGCCTCATGAGCATGTGACCTACAG
Seq C2 exon
GCTGTACTGCCTGAAGATCTATGGCCTTTCCTCTCTCTGGCGTCTGTTCCGGGGGAAGAAGTGGAATGTTCTGCGCCAGCGAGTGGATTCTTGTTCCTATGACCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728:ENSMUST00000026823:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(38.5=97.2)
A:
NO
C2:
PF0502410=Gpi1=PU(59.2=96.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCTTATGTCCCCCTTT
R:
AACAAGAATCCACTCGCTGGC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types