RnoINT0111137 @ rn6
Intron Retention
Gene
ENSRNOG00000020140 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:RGD Symbol;Acc:1359535]
Coordinates
chr10:15294113-15294459:-
Coord C1 exon
chr10:15294306-15294459
Coord A exon
chr10:15294225-15294305
Coord C2 exon
chr10:15294113-15294224
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CATGGGCCTATGTCCTACAGGCT
3' ss Score
7.12
Exon sequences
Seq C1 exon
GCTATATCCACCTAATGTCCCCCTTTATTGAGCACATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGACATCATCGCCCTTCTTACCTTCCACATCTACTGCTTCTATGTGTACGGTGCCAG
Seq A exon
GTATGTATATATTCAAGTGGGCACTTATCGGGGAGTGAGTGCATGGGTGAGGTGTGGCACTCATGGGCCTATGTCCTACAG
Seq C2 exon
GCTGTACTGCCTGAAGATCTATGGCCTCTCCTCGCTCTGGCGTCTCTTCCGGGGAAAGAAGTGGAATGTTCTGCGCCAGCGGGTGGATTCTTGTTCCTATGACCTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020140:ENSRNOT00000027353:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NA
C2:
PF0502410=Gpi1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTTGGACTGACTGTTG
R:
GGCGCAGAACATTCCACTTCT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]