HsaINT0124822 @ hg19
Intron Retention
Gene
ENSG00000007541 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:14135]
Coordinates
chr16:628785-629180:+
Coord C1 exon
chr16:628785-628938
Coord A exon
chr16:628939-629068
Coord C2 exon
chr16:629069-629180
Length
130 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GACAGCACTGCGTCCTGTAGGCT
3' ss Score
3.77
Exon sequences
Seq C1 exon
GCTACATCCACCTCATGTCCCCCTTCGTGGAGCACATCCTTTGGCACGTGGGCCTCTCGGCCTGCCTGGGCCTGACGGTGGCCCTGTCCCTCCTCTCGGACATTATCGCCCTCCTCACCTTCCACATCTACTGCTTTTACGTCTATGGAGCCAG
Seq A exon
GTGGGCGTGGGCTTCCCCCTCCCCACCGCCCCCTGGGAGGTGCAGAGGCTCCGGCTGGGCGGGCGTTCGAGTGGGGCGGGGGCGGGGCGGGGCGGGGCGGGGCCGGGCCCGACAGCACTGCGTCCTGTAG
Seq C2 exon
GCTGTACTGCCTGAAGATCCATGGCCTGTCCTCACTGTGGCGTCTGTTCCGGGGGAAGAAGTGGAACGTTCTGCGCCAGCGCGTGGACTCCTGTTCCTATGACCTGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007541-PIGQ:NM_148920:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NA
C2:
PF0502410=Gpi1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCCACCTCATGTCCCCC
R:
CATAGGAACAGGAGTCCACGC
Band lengths:
253-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)