GgaINT0015103 @ galGal3
Intron Retention
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14275540-14278771:+
Coord C1 exon
chr14:14275540-14275693
Coord A exon
chr14:14275694-14278659
Coord C2 exon
chr14:14278660-14278771
Length
2966 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGCATCTTCTCTTTGCTCAGGCT
3' ss Score
5.84
Exon sequences
Seq C1 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
Seq A exon
GTGAGTTCATCTCTCTTGGTCATGTCTTGGGGGTGTGTTTGTAGATAATGTCTGATGAACACTCAGGGCCCATCTTTACTTTGTGGAGCACTGCACCTCATGGCTGTCTGCTCTTGATGTCTGACAGAGTCAAAGCTTCTTTCCTTAACTCCAAGATGGAGTCAATACAAGTCAACTACAAGATGGACCCTCGATATACAGAATGCAAACAGCAGGTACTGCGGATACATGGGGCTGCTGTGGCTTGATTCCTCACCAGAGAATCCACAAAACTTACACACAAAACTATATGGGAATCTATGAGCCAATTAACATTCTGATCCCAGGCCCAGGTGTCTTACTGGGTGCATCCAATCCTAGTGTAGTGCTCTTGAATTTACACTTTAAGGCAGCAGTTAATTTATTGCATTTTTAATGCATGTAGAAATGATAGTCACAGCAGTGCAAACGATCTACCTTTTGATTCTTTTGTATTTTTAAATAATGACTTGTGGTAGTGACCTGGAAAAATAAAACTATGTGATAGGTGGAGAGCAAGTTCACCCTAACCTCTCATGGTACTTTGCAGTGGCACCCTGCTCAGTTCAGGAGAGTAGAGGAGAGGAGGAGGAGAGAGGAACCCTTGTTCTTCTGGAGAGGCCCACAAGTCCCTGCCTCTACCTGGCTTCAGGGATTCCAGTCTGCATCATGGGTGGCAGCTCTGGGGGTACAACATGGCTATGCCACCATCCTGGTGGCGTTTTCTGGATCTACTGAGGGCCCTATTGCTTGAAAGCGGGACAGAGGCTCAGGGGGAGCATGGGGGAGTGCAGAGGACTTTGAGGCATGCCTTGTGCTGGGCACATTGGAATTACTGTGCCTGCTGACATGCTTTGTTCCTGCCCTCCATTAACAAGTGCTGCAGCAAAGCATCACGCAGACCACTGCAGAGCAGCTGCTTTTGCCAAGGAGACAAGAGGCAAAGTAATGAGTAGGGGAACCTTTGGCTGTTAGAGTGTAGAACTGCCTTTGATCCTCTGCAGGCTGTGAGCAGAGGGCTTCGTGTTGCAAACAACAGAAGAAATGGTAGAACTTCAGTTACAGATAGCTTAGGGAATGGTTATGTTGAGATACAATTTATGAGTTGGTTCTGTTGTGAGCATAGGACTTGCTCCTGAAAATCAGCACTGTTGGTAACACAGAGGTTCTTCCCAACAGGAGAAGAAAGGAATTCTTCCCTTTAGGAGGAAGTTTTTCACCCAGAGGGTGGTGACGCACTGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGCAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGGCTGCTGGTTGGTGACCCTGCACATAGCAGGGGGTTGGAGCTGGATGAGCATTGTGGTCCTTTGCAACCCAGGCCATGCTATGGTTCTATGAACACCTCCAGTTTTCTGGAATTTCTGTTTTGGGCTGTGAGGAGAGGCTTTGGTCCCTTCTGCTTGTGAGTGGAAACAGGAAAAGCATTTTCTCTGCTGATTGCTCTCCTGTTGTGAACTGCAGGGAGTCAGTCTGCCAACCTGAGCTGTGTTAGAAGTATGGAACAGCTATATGTTATCTTACTGCTGGCACCAAACTGTCCCTGCTGTGTCAGCTGCCCCCATGGAGAGTCAGGAGGGTGTACCACTCACCCACATCAGCACAATCACCACAACACCTTGCATTGGTGCAGCTGGAGGAACAAATTGCTGGCTTGGATGCTGGTGAAGTCTGAGCACCCACCCACAACAGGCTTTCCAGTGAAACAAGAGCTGGCATGTGTGCACAGGCAGCAGCAAAGGTGGGGCAGGTGCTCCATCAGGCCCACACCGATGGTGTCAAGGCAGGGTATGCGGGTGAGAGGCACCTTCATCATAGCCATGGATGGTGTGCAGCAGCAAGCTGGAGGAGCCTGCTGGGCACCCTCTGTCCTGGAGATGAGTGCGCTGAGCTGTGCAGTCTGGGGCACCTGCCTCATCCTTGAAGCAGCTGGTGTTCCCCACACCAGATTCTTCTCTGGGATAAGACTCCTTGCCACTGCTTTCACAACGCTGCCTTGAAGCCTGAGCAGCCTTGGTGCTTTGTGTAGGCTGGTTAACCAGTCTGGCTGCTGTAGGTCAGGCTCTCCCAAGCTCTGTTCTGCCCCATAGGTTGGGTCAGTCCCCCTTCCTTACATTCCTGTATGTTGAGCACTGCTCTCCAAAGCTCCTTGTGCCTCTTTTCCCTTCCAGGGGCTCTTTCTTCCTTTGTGTTGTTCTGTAAGTGTCTCTACTTCCCACCTCTCATCACCCCAAGCCTCTCACCATTGCCATTTCCTTGGGTAGCTCCAAGTGTCATAGCACCAAGTTACAAAAGCCATGGGAAAGGATTCAGTAGAGGTGCCAGCAGCCATTTAGTTGATCTTTTCCCACTCTTGTGGATGAAGGTGCAGTGCTCCATTCCTCCCCCTCGCCTCTGTGCCGCAGAGGCAAAATTAAATTGTGCTGACTCAAGTGCAAGCAATAAGGCCTTAGATGCTCCTGCCATGGAAAGGTGTGGAGTAAGGGGGAAAGGGGAGATCTGGGGAGACAGAGGTGGGCTGGGGGGGATAAGCTTGCTGCTCCTGCTGCAGGGAGGGTGGTAGCAGTGGCTGCTCAGAGGCCACCCTCCAGCAGCACGTGGCACCTTGGGTATGCCAACCTCTTCATCACCAGGAGCAGGGAATCAGCCTGGCCGTAGCTATGGGGCATGGCGCAGTGGTTGCCCCACAGTGGTCCAGAACTGCCTGCAGCAGCCTTCCTTGCCTTACCAGGGGCCAGCCCCAGTGTGCTTGGCTAATTTTGCTGCCCCAAGTTCTGTGACATCAGGTGGGCACGGGGTGTAATGATGACAGCCGCTTTGCATTGAGGCTGAGGAGCTCACAGCTCTGATGTGTGGCATCTTCTCTTTGCTCAG
Seq C2 exon
GCTCTACTGCCTGAAGATCTATGGCCTGTCGTCTCTCTGGCGCTTGTTCCGTGGGAAGAAGTGGAACGTCCTCCGGCAGCGGGTGGATTCCTGCTCTTATGACTTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985:ENSGALT00000003090:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(26.8=100)
A:
NA
C2:
PF0502410=Gpi1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]