MmuEX0035083 @ mm10
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:25930958-25934878:-
Coord C1 exon
chr17:25934758-25934878
Coord A exon
chr17:25932105-25932231
Coord C2 exon
chr17:25930958-25931038
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCCTGTCCCTGCAGCGC
3' ss Score
12.86
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAAGGCCAACATGCTGGTTTCTGTGCTACTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAATAACCGAATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCTGAT
Seq A exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCATCTGTGGATAA
Seq C2 exon
CTCTTCATTGGGACCTTGCTCTTCACCATCCTGGTCTTCTTGCTACCCACCACCGCTCTGTACTACCTGGTATTCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728_MULTIEX1-3/7=1-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
PF0502410=Gpi1=FE(22.1=100)
C2:
PF0502410=Gpi1=PD(10.8=63.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCCAACATGCTGGTTTC
R:
ATACCAGGTAGTACAGAGCGGT
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types