DreEX0055480 @ danRer10
Exon Skipping
Gene
ENSDARG00000038097 | pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:ZFIN;Acc:ZDB-GENE-030131-9793]
Coordinates
chr3:26670435-26671887:-
Coord C1 exon
chr3:26671767-26671887
Coord A exon
chr3:26670674-26670800
Coord C2 exon
chr3:26670435-26670588
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAAATTGGGTTGTGTTTCAGCAT
3' ss Score
6.07
5' ss Seq
TCAGTACGT
5' ss Score
5.95
Exon sequences
Seq C1 exon
AAAAGCAAACATCTTTGTGTCTTTCCTTGTGGACATAGCCTTTGGTTTGCTGCTCATCTCATGGCTGTATAGGGAGAATCGTATCAGCAAATTAGCCAATACTCTGGTACCTGTGGCTGAT
Seq A exon
CATGTGGCCAAAGAGCTCCAGCAGCTGTTAGAATGGCTGATGGGAGCTCCTGCTGGACTGAAGATGAACAAGGCTCTCGATCAAGTGCTGGGGAGGTTCTTTCTTTATCACATTCATCTGTGGATCA
Seq C2 exon
GTTACATCCACCTGATGTCTCCTTTCATTGAGAGGATCTTGTGGTACGTCGGACTCTCAGCCTGCTTGGGGCTGACTTTTGCGCTCTCCATCCTGTCCGACATTGTGGCCCTCCTGACTTTCCACATCTACTGCTTTTATGTGTATGGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038097-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
PF0502410=Gpi1=FE(22.1=100)
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAGCCTTTGGTTTGCTGCT
R:
CGTGCTCCATACACATAAAAGCA
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]