BtaEX6107474 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016594 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr25:506600-507121:+
Coord C1 exon
chr25:506600-506620
Coord A exon
chr25:506642-506768
Coord C2 exon
chr25:506968-507121
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGACACCCCCATCCTTGCAGCGT
3' ss Score
8.28
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTCCCCAGGTGGGTCACCGG
Seq A exon
CGTGTGGCCGAGGAGCTCCAGCATCTGCTGCAGTGGTTGATGGGTGCGCCCGCCGGGCTCAAAATGAACCGGGCGCTGGACCAGGTGCTGGGCCGCTTCTTCCTGTATCACATCCACCTGTGGATCA
Seq C2 exon
GCTACATCCACCTCATGTCCCCCTTCATCGAGCACATCCTGTGGCACTTGGGTCTGTCGGCCTGCCTGGGCCTAACGGTCGCCCTGTCCATCCTGTCGGACATCATCTCCCTTCTCACCTTCCACATCTACTGCTTCTACGTCTACGGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016594-'10-8,'10-7,12-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=FE(3.8=100)
A:
PF0502410=Gpi1=FE(26.8=100)
C2:
PF0502410=Gpi1=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]