GgaEX6013146 @ galGal4
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:HGNC Symbol;Acc:HGNC:14135]
Coordinates
chr14:13504735-13511710:+
Coord C1 exon
chr14:13504735-13504855
Coord A exon
chr14:13510489-13510615
Coord C2 exon
chr14:13511557-13511710
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTCTATGTTTGCAGCAT
3' ss Score
7.61
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GAAAGCCAACATCTTTGTCTCTTTGCTGATTGATGTGGCTCTGGGGATACTGCTGATGTCCTGGCTGTACAGAAAGAACCAGATCGGTCACCTTGCTGACACTCTCATCCCCGTGGCTGAT
Seq A exon
CATGTAGCTGAAGAGCTGCAGGACCTGCTCCAGTGGCTGATGGGAGCACCAGCTGGACTGAAAATGAACCGAGCTTTGGATCAGGTGCTGGGTCGTTTCTTCCTTTACCACATCCATCTCTGGATTA
Seq C2 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985-'7-9,'7-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF030879=DUF241=PD(5.4=14.6),PF0502410=Gpi1=PU(21.1=97.6)
A:
PF0502410=Gpi1=FE(22.1=100)
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGATGTGGCTCTGGGGA
R:
CGCTCCATAGACATAGAAGCAGT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]