MmuEX0035083 @ mm9
Exon Skipping
Gene
ENSMUSG00000025728 | Pigq
Description
phosphatidylinositol glycan anchor biosynthesis, class Q [Source:MGI Symbol;Acc:MGI:1333114]
Coordinates
chr17:26068619-26071823:-
Coord C1 exon
chr17:26071703-26071823
Coord A exon
chr17:26069050-26069176
Coord C2 exon
chr17:26068619-26068772
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCCTGTCCCTGCAGCGC
3' ss Score
12.86
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAAGGCCAACATGCTGGTTTCTGTGCTACTGGATGTGGCCCTTGGCTTGCTGCTGCTCTCTTGGCTCCACAGCAATAACCGAATTGGACAGCTGGCCAATGCCCTGGTCCCTGTGGCTGAT
Seq A exon
CGCGTGGCTGAGGAGCTCCAGCATCTGCTGCAGTGGCTGATGGGTGCTCCTGCTGGGCTCAAGATGAATCGGGCACTGGATCAGGTGCTAGGCCGCTTTTTCCTGTACCACATCCATCTGTGGATAA
Seq C2 exon
GCTATATCCACCTTATGTCCCCCTTTATTGAGCATATCCTGTGGCATGTGGGACTCTCAGCCTGCCTTGGACTGACTGTTGCTCTGTCCATCTTTTCGGATATCATCGCCCTTCTCACCTTCCACATCTATTGCTTCTATGTCTACGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025728-'17-24,'17-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0502410=Gpi1=PU(21.1=97.6)
A:
PF0502410=Gpi1=FE(22.1=100)
C2:
PF0502410=Gpi1=FE(26.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCAACATGCTGGTTTCT
R:
GATGTGGAAGGTGAGAAGGGC
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: