GgaEX6013146 @ galGal3
Exon Skipping
Gene
ENSGALG00000001985 | PIGQ
Description
NA
Coordinates
chr14:14268718-14275693:+
Coord C1 exon
chr14:14268718-14268838
Coord A exon
chr14:14274472-14274598
Coord C2 exon
chr14:14275540-14275693
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTCTATGTTTGCAGCAT
3' ss Score
7.61
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GAAAGCCAACATCTTTGTCTCTTTGCTGATTGATGTGGCTCTGGGGATACTGCTGATGTCCTGGCTGTACAGAAAGAACCAGATCGGTCACCTTGCTGACACTCTCATCCCCGTGGCTGAT
Seq A exon
CATGTAGCTGAAGAGCTGCAGGACCTGCTCCAGTGGCTGATGGGAGCACCAGCTGGACTGAAAATGAACCGAGCTTTGGATCAGGTGCTGGGTCGTTTCTTCCTTTACCACATCCATCTCTGGATTA
Seq C2 exon
GCTACATTCACCTGATGTCCCCATTCATCGAGATGATCCTCTGGTATGTTGGTCTGTCAGCTTGCCTGGGTCTGACCGTGGCCCTCTGCATCCTCTCTGACATCATTGCCCTTCTGACCTTCCACATCTACTGCTTCTATGTCTATGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001985-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF030879=DUF241=PD(5.4=14.6),PF0502410=Gpi1=PU(21.1=97.6)
A:
PF0502410=Gpi1=FE(22.1=100)
C2:
PF0502410=Gpi1=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGATGTGGCTCTGGGGA
R:
CGCTCCATAGACATAGAAGCAGT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]