RnoEX0065971 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173885673-173889303:+
Coord C1 exon
chr4:173885673-173885766
Coord A exon
chr4:173886220-173886333
Coord C2 exon
chr4:173889209-173889303
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACCCAATTCAACTACCACAGCAC
3' ss Score
3.05
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTCCAGACCAAGACATTCGTGAAGTTGCCGTTCAACAGTTAGACAACCTCTTGACCGATGAGCTGCTGGACTGCCTCCCACAGCTAGTTCAG
Seq A exon
CACAGAGAAATTCTAAGAAAACAATGGGAAGCTGCCCAGAGCTGTGAGTCACCCTGACATTCGGAAGGTGAAGAAAGGGTTAGGAATGATGTCACACAGCTCACACAGGAGCAG
Seq C2 exon
GCTGTCAAGTTTGAGTGGAGTCTCGAAAGTCCCTTGGTGGAACTCCTGCTTCATCGATCCTTGCAAAGCATCCGAGTGGCTCACCGCCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(1.6=10.5)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Inclusion Isoform:
ENSRNOT00000041499fB10717
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCAGACCAAGACATTCGTG
R:
GTGAGCCACTCGGATGCTTTG
Band lengths:
178-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]