RnoEX0065965 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173865001-173889303:+
Coord C1 exon
chr4:173865001-173865189
Coord A exon
chr4:173885673-173885766
Coord C2 exon
chr4:173889209-173889303
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTCACAGGAACTGTTTTCAGGTT
3' ss Score
3.85
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTTTCTGTGGAAAAGAGGAGATATTTGTGGTTTTATCGTTTCTACTGCAACAATGAGAACTCCTCTCTCCCTCTGGTCTTGGGCAGCGCCCCTGGTTGGGATGAAGGGACAGTTTCGGAAATGCATGCCGTCTTGAGAAGGTGGACATTTTCCCATCCGTTGGAAGCTCTTGGCCTTTTGACTTCCAG
Seq A exon
GTTTCCAGACCAAGACATTCGTGAAGTTGCCGTTCAACAGTTAGACAACCTCTTGACCGATGAGCTGCTGGACTGCCTCCCACAGCTAGTTCAG
Seq C2 exon
GCTGTCAAGTTTGAGTGGAGTCTCGAAAGTCCCTTGGTGGAACTCCTGCTTCATCGATCCTTGCAAAGCATCCGAGTGGCTCACCGCCTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'21-25,'21-23,23-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCCCTCTGGTCTTGGG
R:
CGATGAAGCAGGAGTTCCACC
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]