BtaEX6023763 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92114336-92142379:-
Coord C1 exon
chr5:92142191-92142379
Coord A exon
chr5:92118394-92118487
Coord C2 exon
chr5:92114336-92114430
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTACTTTGTTTTAGTTT
3' ss Score
8.86
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCTCTCTGAGGAAAAGAGAAGATACTTATGGTTTTATCGCTTCTACTGCAACAATGAAAACTGCTCCCTTCCTTTGGTCTTGGGAAGTGCCCCTGGATGGGATGAAAGAACTGTTTCAGAAATGCATACCATTTTAAGAAGATGGAAATTCTCTCACCCTTTGGAGGCACTTGGACTTTTGACTTCAAG
Seq A exon
TTTTCCAGATCAAGAAATTCGTAACGTGGCAGTTCAGCAGTTAGACAACCTCTTGAATGATGAACTACTGGAATATCTCCCACAGCTAGTTCAG
Seq C2 exon
GCTGTCAAGTTTGAATGGAACCTTGAGAGTCCTCTGGTGCAACTTCTGTTACACCGCTCACTACAAAGTGTCCAGATTGCCCATCGTCTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCCCTTCCTTTGGTCT
R:
AGTTGCACCAGAGGACTCTCA
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]