GgaEX6002841 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64206365-64216419:+
Coord C1 exon
chr1:64206365-64206553
Coord A exon
chr1:64215031-64215124
Coord C2 exon
chr1:64216325-64216419
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTGTTTTGCTTTAGTTT
3' ss Score
7.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTCTCGGAGCAACAGAAAAGAATCTTATGGTTTTATCGTTACTATTGCAATAATCAAAATTGCTCCCTTCCTCTGGTACTGGGCAGTGCACCCAGTTGGGATCGAACAACTGTGTCAGAAATGTATTCTGTCATGAGGAAATGGAGATTTTCTAACCCTGTGGAGGCACTTGGGCTTCTAGCTTTCAG
Seq A exon
TTTTCCAGATAAAGATATTCGCAGAACAGCAGTCCAGCAAATAGAAAATCTGTCAAATGATGAGCTGTTAGAATACCTCCCACAGCTGGTTCAG
Seq C2 exon
GTGCTCAAGTTTGAATGGAGTCTGGAAGGCCCTCTGGTGAAACTCCTGCTGAATCGCTCCCTTCAGAGCATCCAAGTAGCCCATCAACTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.1=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTTCCTCTGGTACTGGG
R:
GAGTTTCACCAGAGGGCCTTC
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]