GgaEX6002841 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66213257-66223311:+
Coord C1 exon
chr1:66213257-66213445
Coord A exon
chr1:66221923-66222016
Coord C2 exon
chr1:66223217-66223311
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTGTTTTGCTTTAGTTT
3' ss Score
7.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTCTCGGAGCAACAGAAAAGAATCTTATGGTTTTATCGTTACTATTGCAATAATCAAAATTGCTCCCTTCCTCTGGTACTGGGCAGTGCACCCAGTTGGGATCGAACAACTGTGTCAGAAATGTATTCTGTCATGAGGAAATGGAGATTTTCTAACCCTGTGGAGGCACTTGGGCTTCTAGCTTTCAG
Seq A exon
TTTTCCAGATAAAGATATTCGCAGAACAGCAGTCCAGCAAATAGAAAATCTGTCAAATGATGAGCTGTTAGAATACCTCCCACAGCTGGTTCAG
Seq C2 exon
GTGCTCAAGTTTGAATGGAGTCTGGAAGGCCCTCTGGTGAAACTCCTGCTGAATCGCTCCCTTCAGAGCATCCAAGTAGCCCATCAACTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.1=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTTCCTCTGGTACTGGG
R:
GAGTTTCACCAGAGGGCCTTC
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]