DreEX6067018 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50913025-50914818:-
Coord C1 exon
chr18:50914630-50914818
Coord A exon
chr18:50913282-50913375
Coord C2 exon
chr18:50913025-50913119
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGGCAGGTT
3' ss Score
10.5
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GATGTCGGAGAATGAGAAGGCCTTCCTGTGGAGCAAACGTCAGTCCTGCAGCTCCAGAAACGCTCTCCTGCATCTGCTGCTGGGCAGTGCGCCGCTCTGGGCTCCCCGGGACCTGCCGGAGCTGTACGCTGTGCTGGAGCACTGGGGGCCCGTCAGCCATGCCGAGGCCCTGTTCCTGATCAGCCACCA
Seq A exon
GTTTCATGATCAGCGTGTGCGTTCAGCAGCAGTGCAGTGTTTCCAGCAGATGAGCGACAGTGAACTGGAGGAGTTTCTGCCTCAGCTGGTGCAG
Seq C2 exon
GCCCTGAAGAGTGAGTGGGAGATCGACGGGCCACTGGTGAAGCTTCTGCTGTCCAGATCCATGAGCAGCGTCCGCATCGCTCACCAGCTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.2=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTGCAGCTCCAGAAAC
R:
CGTCGATCTCCCACTCACTCT
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]