RnoEX6044089 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49891538-49893498:+
Coord C1 exon
chr13:49891538-49891726
Coord A exon
chr13:49893189-49893282
Coord C2 exon
chr13:49893404-49893498
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGTCCGAACTCTTTTGCAGCTT
3' ss Score
8.4
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GCTCTCTGATGCCGACAAGAAGCAACTGTGGGAGAAGCGCTATTACTGCCACACTGAGGTGAGCTCGCTCCCCTTGGTGCTCGCCAGTGCACCCAGCTGGGAGTGGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAGGATGCCCTGGGACTCCTGCATGCCAC
Seq A exon
CTTCCCGGACCAGGAGGTGCGGCGCATGGCCGTGCAGTGGATCGGCTCCCTCTCGGATGCTGAGCTGTTGGACTACCTGCCCCAGCTAGTACAG
Seq C2 exon
GCCCTGAAGTACGAGTGCTACCTGGATAGCCCCTTGGTGCGCTTTCTCCTGAAGCGAGCCATCTCCGACCTGCGAGTGACCCACTACTTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'29-26,'29-25,30-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAGCGCTATTACTGCC
R:
GTAGCACTCGTACTTCAGGGC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]