GgaEX6026620 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1737310-1738128:-
Coord C1 exon
chr26:1737940-1738128
Coord A exon
chr26:1737670-1737763
Coord C2 exon
chr26:1737310-1737404
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGACAACTACCTTATGTAGGTT
3' ss Score
4.07
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTGACAGATGCAGACCGCAAACGGCTGTGGGAGAAGCGCTACTACTGCCACGCGGCACCCGGCTCGCTGCCCATGCTGCTGGCCAGTGCACCCAGCTGGGAGTGGGCCTGCCTGCCTGACATCTACGCCCTGCTGAGCCAGTGGACCTACATGAGCCACCAGGATGCCCTGGGGCTCCTTCATGCCAC
Seq A exon
GTTCCCAGACCAGGAGGTGAGGAGGACGGCCGTGCAGTGGATCGACTCCATCTCTGACACGGAGCTGCTGGACTACCTGCCCCAGCTGGTCCAG
Seq C2 exon
GCCTTGAAGTATGAGTGCTACCTGGACAGCCCACTGGTGCGCTTCCTCATGAAGCGAGCAATCTGCGACCTGAAAATCACCCACTATTTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'19-22,'19-20,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTGCCTGACATCTACG
R:
AGTGGGTGATTTTCAGGTCGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]