DreEX6091597 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23367914-23369713:-
Coord C1 exon
chr11:23369525-23369713
Coord A exon
chr11:23368150-23368243
Coord C2 exon
chr11:23367914-23368008
Length
94 bp
Sequences
Splice sites
3' ss Seq
TAACATCCACATTATTCCAGGTT
3' ss Score
6.22
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTGAGTCCAGAGGACCGGCGTCTGCTGTGGGAGAAGCGTTATTTCTGCCATGTGGAAGCCAGTCGTCTGCCGCTGGTTCTAGCCAGTGCGCCCAGCTGGGAGTGGGCATGTTTGCCTGACATCTATGCCCTGCTCCGCCAGTGGGGATGCATGAACCACCTGGACGCACTCGGCCTGCTCAATGCCAC
Seq A exon
GTTTCCAGATCAGGAGTGCAGGCGGACGGCAGTTCAGTGGATGGACTCAATCTCTGACCCAGAACTTCTGGACTTTCTTCCTCAGCTGGTGCAG
Seq C2 exon
GCACTGAAGTATGAATGTTATCTGGACAGTCACCTGGTGCGTTTTTTGCTGAGAAGAGCCATCGGTGATGTGCGCATTGCTCACTACCTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTGACATCTATGCCCTG
R:
AAGAGGTAGTGAGCAATGCGC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]