GgaEX6026620 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1589359-1590177:-
Coord C1 exon
chr26:1589989-1590177
Coord A exon
chr26:1589719-1589812
Coord C2 exon
chr26:1589359-1589453
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGACAACTACCTTATGTAGGTT
3' ss Score
4.07
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTGACAGATGCAGACCGCAAACGGCTGTGGGAGAAGCGCTACTACTGCCACGCGGCACCCGGCTCGCTGCCCATGCTGCTGGCCAGTGCACCCAGCTGGGAGTGGGCCTGCCTGCCTGACATCTACGCCCTGCTGAGCCAGTGGACCTACATGAGCCACCAGGATGCCCTGGGGCTCCTTCATGCCAC
Seq A exon
GTTCCCAGACCAGGAGGTGAGGAGGACGGCCGTGCAGTGGATCGACTCCATCTCTGACACGGAGCTGCTGGACTACCTGCCCCAGCTGGTCCAG
Seq C2 exon
GCCTTGAAGTATGAGTGCTACCTGGACAGCCCACTGGTGCGCTTCCTCATGAAGCGAGCAATCTGCGACCTGAAAATCACCCACTATTTCTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.4=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=FE(16.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTGCCTGACATCTACG
R:
AGTGGGTGATTTTCAGGTCGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]