MmuEX6007658 @ mm9
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139703238-139721024:+
Coord C1 exon
chr6:139703238-139703426
Coord A exon
chr6:139717211-139717304
Coord C2 exon
chr6:139720930-139721024
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTCACATTAACTGTTTTCAGGTT
3' ss Score
7.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACTTTCTGAGGAAAAGAGGAGATATTTGTGGTTTTATCGTCTCTACTGCAACAATGAGAACTCCTCCCTCCCTTTGGTCTTGGGCAGCGCCCCTGGTTGGGATGAAGAGACAGTTTCTGAAATGCATGCAATCTTGAGAAGGTGGACGTTTTCACACCCATGGGAAGCTCTTGGTCTTTTGACTTCCAG
Seq A exon
GTTTCCAGACCAAGACATTCGTGAAGTTGCCGTTCAACAATTAGACACCCTCTTGACTGACGAGCTGCTGGACTGCCTCCCACAGCTAGTGCAG
Seq C2 exon
GCTGTCAAGTTTGAGTGGAACCTCGAAAGTCCCTTGGTGGAACTCCTGCTTCGTCGCTCCTTGCAAAGCATCCGAGTGGCTCACCGTCTGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(34.1=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTCCCTTTGGTCTTG
R:
GAAGCAGGAGTTCCACCAAGG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: