RnoEX6015467 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173885673-173969248:+
Coord C1 exon
chr4:173885673-173885766
Coord A exon
chr4:173889209-173889303
Coord C2 exon
chr4:173969068-173969248
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGCCTCTCACTGCAGGCT
3' ss Score
9.92
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTTTCCAGACCAAGACATTCGTGAAGTTGCCGTTCAACAGTTAGACAACCTCTTGACCGATGAGCTGCTGGACTGCCTCCCACAGCTAGTTCAG
Seq A exon
GCTGTCAAGTTTGAGTGGAGTCTCGAAAGTCCCTTGGTGGAACTCCTGCTTCATCGATCCTTGCAAAGCATCCGAGTGGCTCACCGCCTGTTCTG
Seq C2 exon
GCTGCTGCGGGATGCACAAGGTGAAGACTACTTTAAAAGCTGGTACCAGGAGCTTTTGGCCGCTCTCCAGTTCTGTGCAGGAGAAGCCCTGATCGAAGAGCTTTCCAAAGAGCAGAAACTTGTCAAACTCCTGGGTGATATTGGAGAAAAAGTGAAGTCGGCTGGCGATGCTCAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'23-27,'23-25,26-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=PD(17.5=52.5)
Main Skipping Isoform:
ENSRNOT00000041499fB10717
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTCGTGAAGTTGCCGT
R:
GCTTCTCCTGCACAGAACTGG
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]