BtaEX6023764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92028788-92118487:-
Coord C1 exon
chr5:92118394-92118487
Coord A exon
chr5:92114336-92114430
Coord C2 exon
chr5:92028788-92028968
Length
95 bp
Sequences
Splice sites
3' ss Seq
TAATTGATCTCTTACTTCAGGCT
3' ss Score
6.1
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTTTCCAGATCAAGAAATTCGTAACGTGGCAGTTCAGCAGTTAGACAACCTCTTGAATGATGAACTACTGGAATATCTCCCACAGCTAGTTCAG
Seq A exon
GCTGTCAAGTTTGAATGGAACCTTGAGAGTCCTCTGGTGCAACTTCTGTTACACCGCTCACTACAAAGTGTCCAGATTGCCCATCGTCTTTACTG
Seq C2 exon
GCTGCTAAAGGATGCACAGAATGAAGCTTATTTTAAAATCTGGTATCAGAAGCTATTGGCTGCACTCCAATTCTGTGCAGGAAAAGCCTTGAGGGATGAGTTTTCCAAGGAGCAGAAACTTATCAAGATTCTGGGAGACATTGGGGAAAAAGTCAAGACTGCTAGTGACCCTCAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'17-20,'17-18,18-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=FE(16.9=100)
C2:
PF0061315=PI3Ka=PD(18.0=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACGTGGCAGTTCAGCAGT
R:
CCTCAAGGCTTTTCCTGCACA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]