DreEX0006784 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50912237-50913375:-
Coord C1 exon
chr18:50913282-50913375
Coord A exon
chr18:50913025-50913119
Coord C2 exon
chr18:50912237-50912417
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTCTCTGTCCTGCAGGCC
3' ss Score
12.02
5' ss Seq
CTGGTACAC
5' ss Score
2.74
Exon sequences
Seq C1 exon
GTTTCATGATCAGCGTGTGCGTTCAGCAGCAGTGCAGTGTTTCCAGCAGATGAGCGACAGTGAACTGGAGGAGTTTCTGCCTCAGCTGGTGCAG
Seq A exon
GCCCTGAAGAGTGAGTGGGAGATCGACGGGCCACTGGTGAAGCTTCTGCTGTCCAGATCCATGAGCAGCGTCCGCATCGCTCACCAGCTCTACTG
Seq C2 exon
GCTGCTGCTGGACGCTCTGCAGGACACACTCTTCAGCAGTTTTCTCAGTAAGGTGGTGTGTGTGCTGAAGCACTGCTGCGGGCGCGCTCTGAGGCTGGAGCTGCAGCAGGAGCAGCGGCTGCTGGATCTGCTCACACTGCTGGCCCAGAGCGTACGCACCGCCGACAGGCCCAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'17-18,'17-16,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.8=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=PD(18.5=55.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGTTTCTGCCTCA
R:
CAGTGTGAGCAGATCCAGCAG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]