GgaEX6002840 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66221923-66253684:+
Coord C1 exon
chr1:66221923-66222016
Coord A exon
chr1:66223217-66223311
Coord C2 exon
chr1:66253504-66253684
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTATTATCTGTTAAGGTG
3' ss Score
7.26
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTTTCCAGATAAAGATATTCGCAGAACAGCAGTCCAGCAAATAGAAAATCTGTCAAATGATGAGCTGTTAGAATACCTCCCACAGCTGGTTCAG
Seq A exon
GTGCTCAAGTTTGAATGGAGTCTGGAAGGCCCTCTGGTGAAACTCCTGCTGAATCGCTCCCTTCAGAGCATCCAAGTAGCCCATCAACTTTACTG
Seq C2 exon
GCTATTGAAGAATGCACAGAATGAAGTTCATTTCAAAGTCTGGTATCGGAAACTACTGGCTGCTCTCCAATTCACTGCTGGGAAAGCCTTGAACAATGAATTTTCTAAGGAGGAGAAACTTATCAGAATTTTGGAAGACACTGCTGAAAAAGTAAAAGTTGCCAGTGACGCAAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.8=100)
A:
PF0061315=PI3Ka=FE(16.8=100)
C2:
PF0061315=PI3Ka=PD(18.9=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACAGCAGTCCAGCAAA
R:
TCATTGTTCAAGGCTTTCCCAG
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]