RnoEX0074751 @ rn6
Exon Skipping
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2563911-2567090:-
Coord C1 exon
chr7:2567032-2567090
Coord A exon
chr7:2566239-2566330
Coord C2 exon
chr7:2563911-2564068
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGACACTCTTTCCCCTCCAGGCT
3' ss Score
10.41
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATGGCAAGATTGTCTCCACCAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
Seq A exon
GCTATGGCTTCGTGGACTTCGACAGTCCGTCATCAGCACAGAAGGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
Seq C2 exon
CAACAGGAGCAAGACCCTACAAATTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAAGAGCTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACTCGGATCCTCCGAGACACCACTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076-'12-12,'12-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.339 C2=0.311
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
PF0007617=RRM_1=PD(38.8=83.9)
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGTCTCCACCAAGGCCA
R:
CAGTGGTGTCTCGGAGGATCC
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]