GgaEX1048660 @ galGal3
Exon Skipping
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23316883-23332134:+
Coord C1 exon
chr7:23316883-23316941
Coord A exon
chr7:23319772-23319863
Coord C2 exon
chr7:23331977-23332134
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAGAGTGTTTTATATTTCAGGTT
3' ss Score
7.88
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTATGGGAAAATTGTATCCACAAAGGCTATTTTGGATAAGACAACAAACAAGTGCAAAG
Seq A exon
GTTATGGTTTTGTGGACTTCGACAGCCCAGCAGCTGCTCAGAAGGCAGTTTCTGCTCTAAAGGCTAGTGGAGTCCAGGCACAAATGGCAAAG
Seq C2 exon
CAACAAGAACAGGATCCAACAAATTTATACATTTCCAATTTGCCACTTTCAATGGATGAGCAGGAGCTTGAGAACATGCTTAAGCCTTTTGGGCAGGTTATCTCTACGAGGATATTGCGTGACTCGAGTGGAACAAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-'8-10,'8-6,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.242 C2=0.236
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.9=100)
A:
PF0007617=RRM_1=PD(38.8=83.9)
C2:
PF0007617=RRM_1=PU(66.7=83.0),PF072716=Cytadhesin_P30=PU(0.6=1.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATAAGACAACAAACAAGTGCA
R:
GGCTTGTTCCACTCGAGTCAC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]